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Table 6 Exploring the dendrogram cut level for modified Walktrap with a maximum cluster size of 100

From: RETRACTED ARTICLE: Detangling PPI networks to uncover functionally meaningful clusters

Dendrogram cut level

200

300

500

700

PPI

29.0%

28.0%

30.2%

32.3%

DSD 4.5

23.3%

23.2%

23.2%

24.5%

DSD 5

27.3%

27.5%

27.4%

28.9%

DSD 5.5

29.6%

31.5%

30.6%

31.8%

DSD 6

28.4%

27.8%

27.5%

24.8%

DSD 6.5

25.0%

26.9%

23.6%

19.9%

  1. The reported number is the percentage of nodes placed into a cluster with a matching annotation (i.e. the statistic we are calling % NEC S). At different dendrogram cut levels, the best percentage is bolded; sometimes it is modified Walktrap run directly on the PPI network, and sometimes it is Walktrap plus DSD at a threshold of 5.5