From: Detection of statistically significant network changes in complex biological networks
Parameters | Method | AUC_ROC | Precision | Recall | Accuracy | Specificity | Kappa | Time |
---|---|---|---|---|---|---|---|---|
Mean ± Sd | Mean ± Sd | Mean ± Sd | Mean ± Sd | Mean ± Sd | Mean ± Sd | Mean | ||
d=0.15 (RG) | CF | 0.935 ± 0.051 | 0.849 ± 0.037 | 0.846 ± 0.102 | 0.969 ± 0.011 | 0.983 ± 0.004 | 0.828 ± 0.068 | 0.078 |
d=0.15 (RG) | dGHD | 0.926 ± 0.018 | 0.793 ± 0.021 | 0.878 ± 0.036 | 0.965 ± 0.005 | 0.974 ± 0.003 | 0.813 ± 0.026 | 1.0 |
d=0.15 (RG) | Louvain | 0.980 ± 0.016 | 0.767 ± 0.052 | 1.0 ± 0.0 | 0.965 ± 0.028 | 0.960 ± 0.031 | 0.841 ± 0.113 | 0.012 |
d=0.15 (RG) | Infomap | 0.843 ± 0.012 | 0.262 ± 0.015 | 1.0 ± 0.0 | 0.718 ± 0.022 | 0.685 ± 0.024 | 0.304 ± 0.024 | 0.018 |
d=0.15 (RG) | Spinglass | 0.832 ± 0.011 | 0.249 ± 0.012 | 1.0 ± 0.0 | 0.699 ± 0.018 | 0.665 ± 0.021 | 0.285 ± 0.020 | 0.85 |
d=0.15, d ′=0.3 | CF | 0.927 ± 0.048 | 0.839 ± 0.031 | 0.862 ± 0.098 | 0.969 ± 0.008 | 0.982 ± 0.005 | 0.825 ± 0.054 | 0.081 |
d=0.15, d ′=0.3 | dGHD | 0.922 ± 0.022 | 0.806 ± 0.027 | 0.868 ± 0.045 | 0.966 ± 0.006 | 0.977 ± 0.004 | 0.816 ± 0.032 | 1.0 |
d=0.15, d ′=0.3 | Louvain | 0.978 ± 0.018 | 0.887 ± 0.137 | 0.974 ± 0.042 | 0.982 ± 0.018 | 0.982 ± 0.023 | 0.916 ± 0.083 | 0.013 |
d=0.15, d ′=0.3 | Infomap | 0.849 ± 0.008 | 0.269 ± 0.009 | 1.0 ± 0.0 | 0.728 ± 0.015 | 0.698 ± 0.016 | 0.316 ± 0.016 | 0.020 |
d=0.15, d ′=0.3 | Spinglass | 0.859 ± 0.009 | 0.284 ± 0.013 | 1.0 ± 0.0 | 0.747 ± 0.016 | 0.719 ± 0.017 | 0.339 ± 0.019 | 0.92 |
d=0.3 (RG) | CF | 0.877 ± 0.067 | 0.714 ± 0.075 | 0.789 ± 0.135 | 0.947 ± 0.016 | 0.975 ± 0.011 | 0.716 ± 0.099 | 0.083 |
d=0.3 (RG) | dGHD | 0.724 ± 0.029 | 0.645 ± 0.049 | 0.577 ± 0.059 | 0.921 ± 0.007 | 0.971 ± 0.006 | 0.504 ± 0.051 | 1.0 |
d=0.3 (RG) | Louvain | 0.866 ± 0.019 | 0.406 ± 0.061 | 1.0 ± 0.0 | 0.850 ± 0.034 | 0.833 ± 0.038 | 0.505 ± 0.072 | 0.013 |
d=0.3 (RG) | Infomap | 0.677 ± 0.011 | 0.147 ± 0.004 | 1.0 ± 0.0 | 0.419 ± 0.019 | 0.354 ± 0.022 | 0.100 ± 0.008 | 0.021 |
d=0.3 (RG) | Spinglass | 0.678 ± 0.011 | 0.148 ± 0.004 | 1.0 ± 0.0 | 0.420 ± 0.018 | 0.355 ± 0.021 | 0.100 ± 0.008 | 0.90 |
d=0.3, d ′=0.5 | CF | 0.979 ± 0.005 | 0.771 ± 0.061 | 0.930 ± 0.082 | 0.965 ± 0.012 | 0.969 ± 0.011 | 0.821 ± 0.062 | 0.09 |
d=0.3, d ′=0.5 | dGHD | 0.848 ± 0.071 | 0.700 ± 0.038 | 0.731 ± 0.148 | 0.941 ± 0.010 | 0.964 ± 0.009 | 0.672 ± 0.078 | 1.0 |
d=0.3, d ′=0.5 | Louvain | 0.932 ± 0.029 | 0.478 ± 0.118 | 1.0 ± 0.0 | 0.879 ± 0.054 | 0.866 ± 0.059 | 0.582 ± 0.128 | 0.014 |
d=0.3, d ′=0.5 | Infomap | 0.674 ± 0.010 | 0.145 ± 0.004 | 1.0 ± 0.0 | 0.413 ± 0.018 | 0.348 ± 0.020 | 0.097 ± 0.008 | 0.023 |
d=0.3, d ′=0.5 | Spinglass | 0.711 ± 0.007 | 0.162 ± 0.003 | 1.0 ± 0.0 | 0.481 ± 0.013 | 0.423 ± 0.014 | 0.128 ± 0.006 | 0.94 |
α=2 (PL) | CF | 0.797 ± 0.046 | 0.307 ± 0.307 | 0.792 ± 0.099 | 0.801 ± 0.018 | 0.349 ± 0.051 | 0.802 ± 0.022 | 0.09 |
α=2 (PL) | dGHD | 0.797 ± 0.013 | 0.294 ± 0.009 | 0.809 ± 0.027 | 0.787 ± 0.008 | 0.333 ± 0.015 | 0.784 ± 0.009 | 1.0 |
α=2 (PL) | Louvain | 0.780 ± 0.014 | 0.212 ± 0.010 | 1.0 ± 0.0 | 0.703 ± 0.018 | 0.272 ± 0.016 | 0.690 ± 0.011 | 0.015 |
α=2 (PL) | Infomap | 0.665 ± 0.013 | 0.141 ± 0.004 | 1.0 ± 0.0 | 0.603 ± 0.018 | 0.162 ± 0.012 | 0.484 ± 0.019 | 0.026 |
α=2 (PL) | Spinglass | 0.687 ± 0.014 | 0.153 ± 0.006 | 1.0 ± 0.0 | 0.645 ± 0.021 | 0.194 ± 0.011 | 0.527 ± 0.016 | 0.90 |
α=3 (PL) | CF | 0.825 ± 0.019 | 0.345 ± 0.015 | 0.825 ± 0.035 | 0.826 ± 0.007 | 0.402 ± 0.024 | 0.826 ± 0.004 | 0.085 |
α=3 (PL) | dGHD | 0.808 ± 0.027 | 0.327 ± 0.018 | 0.799 ± 0.050 | 0.816 ± 0.008 | 0.375 ± 0.031 | 0.817 ± 0.004 | 1.0 |
α=3 (PL) | Louvain | 0.774 ± 0.015 | 0.233 ± 0.011 | 1.0 ± 0.0 | 0.736 ± 0.019 | 0.301 ± 0.009 | 0.732 ± 0.019 | 0.015 |
α=3 (PL) | Infomap | 0.670 ± 0.014 | 0.168 ± 0.005 | 1.0 ± 0.0 | 0.635 ± 0.017 | 0.210 ± 0.014 | 0.532 ± 0.014 | 0.027 |
α=3 (PL) | Spinglass | 0.694 ± 0.013 | 0.179 ± 0.007 | 1.0 ± 0.0 | 0.670 ± 0.023 | 0.232 ± 0.012 | 0.571 ± 0.017 | 0.94 |