From: Finding low-conductance sets with dense interactions (FLCD) for better protein complex prediction
Network | Method | # complex | #. matched | Coverage | Recall | Precision | F-measure | Sn | PPV | Acc | MMR |
---|---|---|---|---|---|---|---|---|---|---|---|
SceDIP | FLCD | 2134 | 120 | 3921 | 0.6522 | 0.1603 | 0.2573 | 0.4001 | 0.3901 | 0.3951 | 0.3206 |
CONE | 380 | 74 | 1503 | 0.4022 | 0.1868 | 0.2551 | 0.2749 | 0.4015 | 0.3322 | 0.1533 | |
LinkC | 1839 | 109 | 3735 | 0.5924 | 0.1104 | 0.1862 | 0.4775 | 0.3646 | 0.4173 | 0.2993 | |
SR-MCL | 2851 | 41 | 4687 | 0.1964 | 0.0230 | 0.0402 | 0.4592 | 0.2104 | 0.3108 | 0.0726 | |
SceBG | FLCD | 4027 | 124 | 5836 | 0.6561 | 0.1393 | 0.2298 | 0.4643 | 0.4315 | 0.4476 | 0.3611 |
CONE | 522 | 86 | 2735 | 0.4450 | 0.1533 | 0.2293 | 0.4537 | 0.4452 | 0.4494 | 0.1795 | |
LinkC | 5382 | 109 | 6076 | 0.6349 | 0.0918 | 0.1604 | 0.8179 | 0.3504 | 0.5354 | 0.3285 | |
SR-MCL | 1862 | 65 | 5889 | 0.3439 | 0.0673 | 0.1126 | 0.7360 | 0.2436 | 0.4234 | 0.1384 | |
SceIntAct | FLCD | 3394 | 120 | 4678 | 0.6417 | 0.1452 | 0.2368 | 0.4183 | 0.4034 | 0.4108 | 0.3482 |
CONE | 496 | 79 | 1994 | 0.4225 | 0.1633 | 0.2356 | 0.3587 | 0.4296 | 0.3925 | 0.1927 | |
LinkC | 1297 | 80 | 5290 | 0.4278 | 0.0732 | 0.1251 | 0.9028 | 0.1986 | 0.4234 | 0.1886 | |
SR-MCL | 1079 | 45 | 5342 | 0.1337 | 0.0190 | 0.0941 | 0.6246 | 0.1850 | 0.3399 | 0.0960 | |
SceMINT | FLCD | 2483 | 111 | 4210 | 0.5904 | 0.1800 | 0.2759 | 0.4147 | 0.4086 | 0.4116 | 0.3231 |
CONE | 513 | 67 | 2335 | 0.3564 | 0.1267 | 0.1869 | 0.3274 | 0.4017 | 0.3626 | 0.1519 | |
LinkC | 2201 | 100 | 4068 | 0.5319 | 0.1040 | 0.1740 | 0.4744 | 0.4038 | 0.4377 | 0.2744 | |
SR-MCL | 3698 | 24 | 4976 | 0.1277 | 0.0112 | 0.0205 | 0.4192 | 0.1999 | 0.2894 | 0.0481 |