petal: Co-expression network modelling in R

BMC Systems Biology

Table 2 Sample network threshold table

thresh	R ²	slope/	mean	mean	%used	%bigComp
		power	CC	Path
0.878	0.94	-2.02	0.36	6.74	21	32
0.834	0.93	-1.75	0.38	7.71	46	91
0.789	0.91	-1.58	0.40	5.70	68	97
0.745	0.87	-1.42	0.41	4.62	82	99
0.700	0.84	-1.26	0.42	3.91	91	99
0.656	0.78	-1.09	0.43	3.40	95	99
0.611	0.70	-0.92	0.44	3.02	98	99

Each row represents a network model based on the threshold in Column 1, R ² and slope/power are are used to determine scale-free, meanCC and meanPath are used to conclude small-word, %used indicates how much of the original dataset is maintained, and %bigComp gives the percentage of vertices that are in the biggest component of the network model

ISSN: 1752-0509