Fig. 2
From: JigCell Run Manager (JC-RM): a tool for managing large sets of biochemical model parametrizations
Steps to create a parameter list graph from an initial model file. a The SBML model is loaded in the editor and all its component are displayed in the tables. b The JC-RM interface contains two nodes representing mutant configurations of the initial model setup. For details on how to create those nodes, refer to the text. To edit specific parameter values, the modeler can use the filtering capabilities of the editor. A new value can be assigned in 3 different ways: more details on this can be found in the text. c A more complex DAG connects different parameter configurations. d Of particular interest, the node called ‘GAL_CLB2_Cdh1’: it inherits from two parents and the specific values inherited from each parent are clearly marked in the tabular view