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Table 4 Connections of GI1 contigs by FINISH. Note that although FINISH does not rescale optical map, the rescaled gap sizes are shown here.

From: OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly

Neighboring contigs Gap size (bp) Best contig path Contig path length (bp) Length difference Consistent
019-,034+ 24373 019-:200-:034+ 24362 11 1
017+,043- 9345 017+:176-:043- 9365 20 1
018-,033- 21609 018-:262+:181-:259-:033- 21547 62 1
034+,007+ 12182 034+:175-:007+ 12096 86 1
003+,038+ 16008 003+:227-:205+:038+ 16095 87 1
036+,013- 17106 036+:149-:013- 17269 163 1
039-,057- 16268 039-:175-:057- 16105 163 1
029-,070- 8250 029-:179-:070- 7930 320 1
035+,006- 67333 035+:261-:173-:099-:182+:006- 67009 324 1
023+,010+ 19779 023+:159+:010+ 20127 348 1
037+,025+ 18649 037+:176+:025+ 18218 431 1
043-,056+ 10828 043-:240+:056+ 10288 540 1
004-,035+ 24146 004-:175-:035+ 23260 886 1
010+,002+ 6451 010+:245+:002+** 5556 895 1
044+,020- 44467 044+:168+:020- 43369 1098 1
026+,044+ 17568 026+:199+:044+** 15881 1687 1
027-,016- 75414 027-:196+:103-:126-:063-:016-** 72109 3305 0
005+,008-* 10972 005+:175+:008- 17552 6580 0
041+,104+ 27829 041+:175-:104+** 20998 6831 0
084+,071+ 40296 084+:175+:071+** 15449 24847 0
030-,132+* 2838 030-:227-:205+:064+:159+:053-:175-:065-:132+ 109213 106375 0
046-,119+* 23104 046-:230-:009-:154+:139-:101+:186-:105+:126-:048+:175+:053+:159-:064-:205-:227+:119+ 322943 299839 0
  1. *Gap closure unique to FINISH. **Best contig path different from those by OMACC.