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Table 2 Connections of the E. coli contigs by FINISH. The notations are the same as in Table 1.

From: OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly

Neighboring contigs Gap size (bp) Best contig path Contig path length (bp) Length difference Correct
006+,091+ 2326 006+:116+:091+ 2327 1 1
004+,086+ 10658 004+:005+:086+ 10660 2 1
032-,046+ 6058 032-:047+:046+ 6056 2 1
044-,017+ 11342 044-:047+:017+ 11340 2 1
013+,061+ 23861 013+:011-:053+:061+ 23864 3 1
010+,069- 4003 010+:078+:069- 4007 4 1
050-,059- 17496 050-:116-:059- 17500 4 1
012-,036- 20629 012-:011+:036- 20635 6 1
086+,054- 6739 086+:117-:054- 6745 6 1
017+,012- 10239 017+:018+:012- 10246 7 1
029-,010+ 38377 029-:015+:056+:116-:010+ 38384 7 1
057-,079- 29696 057-:053-:011+:075+:111-:080-:079- 29703 7 1
023+,022+ 40884 023+:117+:022+ 40893 9 1
048+,044- 27181 048+:028+:044- 27191 10 1
002+,050- 25463 002+:015+:050- 25475 12 1
108+,062- 48785 108+:117-:062- 48800 15 1
120+,105- 57776 120+:115-:043-:103-:039+:104+:113-:100-:073-:105- 57885 109 0
059-,107- 15847 059-:078+:063+:092+:110-:027-:107- 15609 238 0*
062-,016+ 11600 062-:015-:016+ 11238 362 1
091+,067- 24244 091+:053-:011+:067- 23876 368 1
046+,120+ 18124 046+:101+:084-:087-:025-:122-:120+ 18753 629 1
054-,032- 41348 054-:101+:084-:087-:025-:122-:123-:118-:116-:032- 41983 635 1
076+,029- 10053 076+:028+:029- 9285 768 1
001+,023+ 29005 001+:117+:023+ 29788 783 0*
016+,033- 8649 016+:083+:033- 6842 1807 0*
069-,108+ 113278 069-:116-:074+:082+:084-:087-:025-:122-:123-:088+:026-:092+:110-:027-:108+ 111423 1855 0*
045+,057- 56400 045+:115-:043-:121-:024-:005+:003-:058+:119+:057- 46042 10358 0*
022+,002+ 49821 022+:116-:002+ 14242 35579 0
038-,076+ 144606 038-:117+:111+:075-:011-:053+:021+:124+:014-:015-:076+ 86949 57657 0*
085+,048+ 122463 085+:116+:007-:111-:048+ 52387 70076 0*