Starch metabolic gene | TF gene | TF family | Binding Site1 | ATTED Correlation2 | TF rank3 | Family rank4 |
---|
At4g18240 | SS4 | At2g02070 | AtIDD5 | C2H2 | Y | 0.542 | 9 | 1/122 |
At5g11720 | AGLU- like 4 | At3g50700 | C2H2 | C2H2 | Y | 0.295 | 87 | 5/122 |
At5g64860 | DPE 1 | At2g39900 | WLIM2a | LIM | n.a. | 0.715 | 1 | 1/13 |
At1g32900 | GBSS | At1g73870 | COL7 | C2C2-CO-like | n.a. | 0.609 | 4 | 3/42 |
At1g32900 | GBSS | At2g21320 | COL | C2C2-CO-like | n.a. | 0.608 | 5 | 4/42 |
At5g24300 | SS1 | At5g06770 | KH-CCCH | C3H | n.a. | 0.422 | 31 | 3/172 |
- 1. Y = potential binding site of a TF was found at the 2,000-base upstream region of target gene by the comparative TF family analysis; n.a. = information of a binding site of that TF is not available in AthaMap http://www.athamap.de/.
- 2. Pearson correlation calculated from the 58 GeneChip experiments including 1,388 arrays using the weighted Pearson correlation in ATTED database http://atted.jp/.
- 3. Rank of TF based on the ATTED correlation of 1,849 TF genes in the database.
- 4. Rank of TF based on the ATTED correlation of TF genes in each specific TF family. The numerator indicates the rank and the denominator indicates the number of genes in a specific TF family.