Table 3 Optimal parameter settings for GNE model
From: GNE: a deep learning framework for gene network inference by aggregating biological information
Dataset | Learning rate | Batch size | Embedding dimension (d) | Epoch | Negative samples |
|---|---|---|---|---|---|
Yeast | 0.005 | 256 | 128 | 20 | 10 |
E. coli | 0.002 | 128 | 128 | 20 | 10 |