Table 6 List of proteins and their p-values simultaneously identified by LMM or LR-SAM methods
From: Analysis of significant protein abundance from multiple reaction-monitoring data
Protein | Models | # of peptide | Simultaneously Identified model | |||||
|---|---|---|---|---|---|---|---|---|
LMM(RF) | LMM(RR) | W | W 1 | W S | S VC | |||
IGJ | 2.E-18 | 3.E-21 | 1.E-05 | 1.E-04 | 2.E-07 | 3.E-14 | 3 | All |
IGHG3 | 2.E-10 | 3.E-18 | 2.E-07 | 2.E-07 | 2.E-07 | 9.E-11 | 1 | All |
IGHG1 | 3.E-09 | 8.E-17 | 3.E-07 | 3.E-07 | 3.E-07 | 3.E-10 | 1 | All |
GPX3 | 5.E-06 | 5.E-09 | 9.E-05 | 9.E-05 | 9.E-05 | 1.E-05 | 1 | All |
FBLN1 | 1.E-01 | 7.E-11 | 3.E-05 | 1.E-05 | 5.E-06 | 2.E-07 | 2 | LR-SAM |
C163A | 3.E-03 | 2.E-08 | 7.E-07 | 7.E-07 | 7.E-07 | 4.E-10 | 1 | LR-SAM |
ISLR | 2.E-01 | 6.E-04 | 4.E-07 | 4.E-07 | 4.E-07 | 1.E-09 | 1 | LR-SAM |
FCG3A | 8.E-02 | 8.E-04 | 6.E-07 | 6.E-07 | 6.E-07 | 3.E-09 | 1 | LR-SAM |
QSOX1 | 2.E-01 | 2.E-03 | 8.E-07 | 8.E-07 | 8.E-07 | 3.E-09 | 1 | LR-SAM |
FBLN3 | 2.E-02 | 2.E-06 | 4.E-07 | 4.E-07 | 4.E-07 | 3.E-09 | 1 | LR-SAM |
SHBG | 4.E-03 | 1.E-04 | 1.E-05 | 5.E-05 | 2.E-06 | 9.E-08 | 2 | LR-SAM |
LG3BP | 1.E-02 | 4.E-06 | 3.E-05 | 5.E-06 | 5.E-06 | 2.E-07 | 2 | LR-SAM |
CATB | 2.E-01 | 2.E-03 | 7.E-06 | 7.E-06 | 7.E-06 | 3.E-07 | 1 | LR-SAM |
HPT | 6.E-06 | 3.E-03 | 1.E-04 | 2.E-05 | 3.E-05 | 7.E-06 | 2 | LR-SAM |
POSTN | 9.E-02 | 3.E-04 | 1.E-04 | 1.E-04 | 1.E-04 | 1.E-05 | 1 | LR-SAM |
SODE | 4.E-02 | 7.E-05 | 2.E-04 | 2.E-04 | 2.E-04 | 2.E-05 | 1 | LR-SAM |
1433S | 1.E-01 | 8.E-04 | 1.E-04 | 1.E-04 | 1.E-04 | 2.E-05 | 1 | LR-SAM |
FSTL1 | 2.E-01 | 2.E-03 | 5.E-05 | 5.E-05 | 5.E-05 | 7.E-05 | 1 | LR-SAM |
CD5L | 3.E-15 | 1.E-30 | 8.E-05 | 4.E-01 | 2.E-06 | 9.E-13 | 3 | LMM |
APOA4 | 3.E-04 | 1.E-07 | 1.E-03 | 1.E-01 | 7.E-04 | 2.E-04 | 2 | LMM |