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Table 5 The number of proteins perturbed in t:t + s time points and their nes value of the clustering among top of the ranking from ‘Collective Influence’ algorithm are shown. Nes values with > = 1.3 are italicized

From: Extracting proteins involved in disease progression using temporally connected networks

 

t = 1

t = 2

t = 3

t = 4

t = 5

t = 6

t = 7

t = 8

t = 9

t = 10

s = 0

–

87,0.92

24,0.51

162,0.95

253,0.87

41,a

44,0.91

570,0.91

18,-1.26

2,-0.14

s = 1

12,1.28

2,0.57

9,1.03

67,1.21

13,1.18

4,1.49

23,1.25

8,1.22

–

–

s = 2

4,0.92

2,1.38

9,1.24

4,1.38

3,1.33

3,1.61

5,1.40

–

–

–

s = 3

2,1.47

–

2,1.82

1,1.25

–

–

2,1.61

–

–

–

s = 4

2,1.30

–

–

2,1.48

2,1.80

2,1.75

–

–

–

–

s = 5

–

–

–

–

–

–

–

–

–

–

s = 6

–

–

2,1.77

–

–

–

–

–

–

–

  1. anegative nes values not obtained on randomizations