Fig. 6
From: Identification of reaction organization patterns that naturally cluster enzymatic transformations
Manual curation of reactant-pairs. Panel a illustrates the proposed mechanism for reaction R00018 and its tree structure (TS). In this reaction, D-Ribose 5-phosphate (red) and D-Glyceraldehyde 3-phosphate (blue) are converted into Pyridoxal phosphate in the presence of an ammonia molecule (green). Figure adapted from reference [13]. Panel b illustrates the proposed mechanism for reaction R07795 and its TS. This reaction is the conversion of 3-Sulfocatechol into 2-Hydroxymuconate. Figure adapted from reference [14]. The pairs in TSs that follow that reaction’s proposed mechanism are marked by a checkmark. The TSs are also shown in string format (RSF), (see Methods)