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Table 2 List of photosynthesis related genes that are down regulated under high ambient temperature

From: The mRNA and miRNA transcriptomic landscape of Panax ginseng under the high ambient temperature

Database

Contig ID

G3

G5

FC

DEG

Protein description

Protein symbol

UniRef90

TRINITY_DN310811_c0_g1_i1

3.985

3.581

0.27

O

Photosystem II CP43 reaction center protein

psbC CP43

UniRef90

TRINITY_DN310811_c0_g2_i1

4069.172

3630.229

0.281

O

Photosystem II CP43 reaction center protein

psbC CP43

UniRef90

Contig5643

191.474

162.955

0.365

O

Photosystem II CP47 reaction center protein

psbB

UniRef90

Contig14080

2556.7

1979.351

0.541

 

Photosystem II CP43 reaction center protein

psbC CP43

UniRef90

Contig14080

9.28

6.867

0.541

 

Photosystem II D2 protein

psbD

UniRef90

TRINITY_DN187814_c0_g1_i1

1027.871

708.731

0.563

 

Photosystem II CP47 reaction center protein

psbB

UniRef90

TRINITY_DN211582_c2_g7_i1

749.004

512.517

0.624

 

Root phototropism protein, putative

RCOM_1092950

UniRef90

TRINITY_DN214723_c1_g1_i1

961.187

652.51

0.676

 

Photosystem II reaction center Psb28 protein

 

UniRef90

Contig17873

98.53

66.629

0.679

 

Photosystem II 5 kD family protein

POPTR_0009s05720g

UniRef90

TRINITY_DN178366_c1_g1_i1

4.157

2.593

0.684

 

Putative photosystem I reaction center subunit X

 

UniRef90

TRINITY_DN216985_c9_g2_i1

3.517

1.98

0.69

 

Photosystem II 10 kDa polypeptide family protein

POPTR_0001s42970g

UniRef90

TRINITY_DN71881_c0_g1_i1

34.577

18.701

0.74

 

Photosystem I P700 chlorophyll a apoprotein A2

RCOM_2119600

UniRef90

TRINITY_DN179684_c0_g1_i1

34.577

18.701

0.774

 

Photosystem I reaction center subunit II, chloroplast

RCOM_0677760

UniRef90

TRINITY_DN214723_c1_g2_i1

36.482

13.331

0.851

 

Photosystem II reaction center Psb28 protein

 

UniRef90

TRINITY_DN198228_c4_g1_i1

9.8

2.752

0.892

 

Photosystem I reaction center subunit VI

RCOM_1493780

UniRef90

Contig14782

20.642

5.583

0.899

 

DNA photolyase

At4g25290

  1. FC is the fold-change of contigs (G5/G3)