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Table 3 The summary of specificities for the four compared methods under different significant levels (α) and proportions of reproducible genes (γ)

From: Quantitative reproducibility analysis for identifying reproducible targets from high-throughput experiments

 

The proposed Method

The copula mixture method [10]

Benjamini & Heller method [9]

The rank product method [8]

 

α=0.1

α=0.05

α=0.1

α=0.05

α=0.1

α=0.05

α=0.1

α=0.05

γ=80%

0.996(0.002)

0.997(0.0017)

0.009(0.0058)

0.025(0.0152)

0.994(0.0021)

0.999(0.001)

1(0)

1(0)

γ=60%

0.998(9e-04)

0.999(7e-04)

0.029(0.0075)

0.057(0.0144)

0.997(0.0015)

0.999(7e-04)

1(0)

1(0)

γ=40%

0.999(7e-04)

0.999(6e-04)

0.07(0.0136)

0.139(0.0268)

0.999(7e-04)

1(4e-04)

1(0)

1(0)

γ=20%

0.999(4e-04)

0.999(3e-04)

0.999(9e-04)

1(4e-04)

1(3e-04)

1(1e-04)

1(0)

1(0)

γ=10%

0.999(4e-04)

1(3e-04)

1(1e-04)

1(1e-04)

1(1e-04)

1(1e-04)

1(2e-04)

1(1e-04)

γ=5%

1(3e-04)

1(3e-04)

1(1e-04)

1(0)

1(1e-04)

1(0)

1(3e-04)

1(1e-04)

γ=1%

1(3e-04)

1(3e-04)

1(1e-04)

1(0)

1(0)

1(0)

1(4e-04)

1(2e-04)