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Table 3 Validation rates for the three protocols—our protocol EP-DNN and the two recent algorithms that define the state-of-the-art, DEEP-EN and RFECS, where we keep the number of enhancer predictions approximately constant, at 100,000

From: Opening up the blackbox: an interpretable deep neural network-based classifier for cell-type specific enhancer predictions

H1 Prediction

# of Predictions

Validation rate (%)

EP-DNN

104,994

90.76

DEEP

105,030

86.43

RFECS

104,155

78.76

IMR90 Prediction

# of Predictions

Validation Rate (%)

EP-DNN

103,196

93.79

DEEP

103,751

93.28

RFECS

103,624

93.23

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BMC Systems Biology

ISSN: 1752-0509

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