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Table 7 Specificity and runtime comparison using real tumors

From: SNVSniffer: an integrated caller for germline and somatic single-nucleotide and indel mutations

Caller

FP

Specificity (%)

Time (h)

SNVSniffer(M1)

12387

99.9995

1.8

SomaticSniper

209530

99.9923

1.2

VarScan2

4507

99.9998

2.9

JSM2

38550

99.9986

5.0

MuTect

2463700

99.9096

8.7

  1. Best results are highlighted in boldface