Wnt signal transduction pathways: modules, development and evolution

Nayak, Losiana; Bhattacharyya, Nitai P.; De, Rajat K.

doi:10.1186/s12918-016-0299-7

BMC Systems Biology

Table 4 A list of 99 species-specific Wnt signaling pathways and their respective 18S rRNA Reference ids

From: Wnt signal transduction pathways: modules, development and evolution

Sl.	KEGG	Binomial	Common	No. of	No. of	18S rRNA
No.	code	nomenclature	name	genes	modules	sequence id
1	aag	A. aegypti	Yellow fever	41	6	U65375.1 [G]
			mosquito
2	acs	A. carolinensis	Green anole	61	9	AY859624.1 [G-P]
3	aec	A. echinatior	Panamanian	36	6	AEVX01007365 [G-S]
			leafcutter ant
4	aga	A. gambiae	Mosquito	39	6	AM157179.1 [G]
5	ame	A. mellifera	Honey bee	43	7	AB126807.1 [G-P]
6	amj	A. mississippiensis	American	62	9	AF173605.1 [G]
			alligator
7	aml	A. melanoleuca	Giant Panda	62	9	ACTA01092993 [G-S]
8	api	A. pisum	Pea aphid	42	8	U27819.1 [G]
9	apla	A. platyrhynchos	Mallard	56	8	AF173614.1 [G]
10	aqu	A. queenslandica	Sponge	32	6	EF654521.1 [G-P]
11	asn	A. sinensis	Chinese	59	9	JX481969.1 [G-P]
			alligator
12	bacu	B. acutorostrata	Mink whale	63	9	ATDI01000034 [G-S]
		scammoni
13	bfo	B. floridae	Florida	42	7	M97571.1 [G]
			lancelet
14	bmor	B. mori	Domestic	46	8	DQ347470.1 [G]
			silkworm
15	bmy	B. malayi	Filaria	38	7	AF036588.1 [G-P]
16	bom	B. mutus	Wild yak	63	9	AGSK01136783 [G-S]
17	bta	B. taurus	Cow	63	9	NR_036642.1 [G]
18	cbr	C. briggsae	-	31	5	U13929.1 [G-P]
19	cel	C. elegans	Nematode	27	4	NR_000054.1 [G]
20	cfa	C. familiaris	Dog	63	9	AY623831.1 [G-P]
21	cfo	C. floridanus	Florida	42	7	AEAB01019515 [G-S]
			carpenter ant
22	cge	C. griseus	Chinese hamster	63	9	NR_045132.1 [G]
23	chx	C. hircus	Goat	61	9	DQ149973.1 [G-P]
24	cin	C. intestinalis	Sea squirt	42	7	AB013017.1 [G-P]
25	cjc	C. jacchus	White tufted	62	9	AB571241.1 [G-P]
			ear marmoset
26	clv	C. livia	Rock pigeon	56	8	AF173630.1 [G]
27	cmk	C. milii	Elephant shark	58	8	AY049813.1 [G]
28	cqu	C. quinquefasciatus	Southern house	41	6	AAWU01003351 [G-S]
			mosquito
29	crg	C. gigas	Pacific oyster	45	8	AB064942.1 [G]
30	dan	D. ananassae	-	42	7	XR_046314.1 [G]
31	der	D. erecta	-	43	7	XR_046906.1 [G]
32	dgr	D. grimshawi	-	43	7	[S-E]
33	dme	D. melanogaster	Fruit fly	42	7	NR_133559.1 [G]
34	dmo	D. mojavensis	-	42	6	XR_047783.1 [G]
35	dpe	D. persimilis	-	39	6	XR_048244.1 [G]
36	dpo	D. pseudoobscura	-	41	7	XR_053284.1 [G]
		pseudoobscura
37	dre	D. rerio	Zebrafish	63	9	AC139725 [G-S]
38	dse	D. sechellia	-	42	7	XR_048770.1 [G]
39	dsi	D. simulans	-	34	6	AY037174.1 [G]
40	dvi	D. virilis	-	43	7	XR_049279.1 [G]
41	dwi	D. willistoni	-	43	7	XR_049811.1 [G]
42	dya	D. yakuba	-	43	7	AAEU02010701 [G-S]
43	ecb	E. caballus	Horse	62	9	NR_046271.1 [G]
44	fca	F. catus	Domectis cat	62	9	AY150542.1 [G-P]
45	fch	F. cherrug	Saker falcon	56	8	AKMU01028905 [G-S]
46	gga	G. gallus	Chicken	57	9	AF173612.1 [G]
47	ggo	G. gorilla gorilla	Western lowland	62	9	CABD030100652 [G-S]
			gorilla
48	hgl	H. glaber	Naked mole rat	63	9	AHKG01114378 [G-S]
49	hmg	H. magnipapillata	-	30	6	ABRM01041397 [G-S]
50	hro	H. robusta	-	42	8	AMQM01008875 [G-S]
51	hsa	H. sapiens	Human	63	9	X03205.1 [G]
52	hst	H. saltator	Jerdon’s	42	7	AEAC01025389 [G-S]
			jumping ant
53	isc	I. scapularis	Black-legged	44	8	ABJB010537244 [G-S]
			tick
54	lcm	L. chalumnae	Coelacanth	61	9	L11288.1 [G]
55	lgi	L. gigantea	Owl limpet	34	7	FJ977632.1 [G-P]
56	loa	L. loa	Eye worm	41	8	DQ094173.1 [G-P]
57	lve	L. vexillifer	Yangtze River	63	9	AUPI01105851 [G-S]
			dolphin
58	mcc	M. mulatta	Rhesus Monkey	62	9	FJ436026 [G-P]
59	mcf	M. fascicularis	Crab eating macaque	63	9	AB172927 [G-S]
60	mde	M. domestica	House fly	42	7	GQ465780.1 [G-P]
61	mdo	M. domestica	Opossum	62	9	AJ311676.1 [G-P]
62	mgp	M. gallopavo	Turkey	56	8	AJ419877.1 [G]
63	mmu	M. musculus	Mouse	63	9	NR_003278.3 [G]
64	myb	M. brandtii	Brandt’s bat	61	9	ANKR01250841 [G-S]
65	myd	M. davidii	-	61	9	ALWT01111512 [G-S]
66	mze	M. zebra	Zebra mbuna	61	9	GBAN01001852 [G-S]
67	ngi	N. galili	Upper Galilee	63	9	JO020273 [G-S]
			mountains blind
			mole rat
68	nle	N. leucogenys	Northern white	63	9	ADFV01131837 [G-S]
			cheeked gibbon
69	nve	N. vectensis	Sea anemone	30	6	AF254382.1 [G]
70	nvi	N. vitripennis	Jewel wasp	42	7	GQ410677.1 [G-P]
71	oaa	O. anatinus	Platypus	54	8	AJ311679.1 [G-P]
72	oas	O. aries	Sheep	63	9	AY753190.1 [G-P]
73	ocu	O. cuniculus	Rabbit	63	9	NR_033238.1 [G]
74	ola	O. latipes	Japanese medaka	59	9	AB105163.1 [G]
75	pale	P. alecto	Black flying fox	63	9	ALWS01159237 [G-S]
76	phd	P. hodgsonii	Chiru	61	9	AGTT01252085 [G-S]
77	phu	P. humanus	Human body	41	7	AF139482.1 [G-P]
		corporis	louse
78	pon	P. abelii	Sumatran	63	9	ABGA01173767 [G-S]
			orangutan
79	pps	P. paniscus	Bonobo	63	9	AJFE01002621 [G-S]
80	pss	P. sinensis	Chinese soft	60	9	JX481969.1 [G-P]
			shelled turtle
81	ptr	P. troglodytes	Chimpanzee	63	9	AADA01153094 [G-S]
82	pxy	P. xylostella	Diamondback moth	32	5	JX390653.1 [G-P]
83	rno	R. norvegicus	Rat	63	9	NR_046237.1 [G]
84	rro	R. roxellana	Golden snub	63	9	JABR01093782 [G-S]
			nosed monkey
85	shr	S. harrisii	Tasmanian devil	61	9	AFEY01231219 [G-S]
86	smm	S. mansoni	-	26	4	M62652.1 [G]
87	soc	S. invicta	Red fire ant	43	7	AY334566.1 [G-P]
88	spu	S. purpuratus	Purple	46	6	L28056.1 [G]
			sea urchin
89	ssc	S. scrofa	Pig	62	9	AY265350.1 [G]
90	tad	T. adhaerens	-	26	5	ABGP01001110 [G-S]
91	tca	T. castaneum	Red flour	43	7	HM156711.1 [G-P]
			beetle
92	tgu	T. guttata	Zebra finch	56	8	ABQF01063677 [G-S]
93	tru	T. rubripes	Torafugu	60	9	AB437886.1 [G-P]
94	tsp	T. spiralis	-	39	8	AY497012.1 [G-P]
95	tup	T. chinensis	Chinese tree shrew	62	9	ALAR01203917 [G-S]
96	umr	U. maritimus	Polar bear	60	9	AVOR01047284 [G-S]
97	xla	X. laevis	African	54	9	X04025.1 [G]
			clawed frog
98	xma	X. maculatus	Southern platyfish	59	9	KJ774770.1 [G-P]
99	xtr	X. tropicalis	Western	60	9	AAMC02038921 [G-S]
			clawed frog

Notations: G: GenBank accession number (Complete sequence), G-P: GenBank accession number (Partial Sequence), G-S: GenBank accession number of predicted 18S rRNA sequence as given in SILVA database (Pruesse et al. 2007), S-E: Sequence taken from (Stage and Eickbush 2007)

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