Fig. 1
From: Extending rule-based methods to model molecular geometry and 3D model resolution
Three conformations of the all-atom molecular structure of the shrimp tropomyosin Pen a 1 (tan). The IgE binding regions are circled. The IgE binding regions (various colors) are located in five regions per strand, although for our rule-based model, we have split the longer rightmost region into two separate regions so that there are six binding regions per strand. We use the native configuration (left), an accentuated curve version called S-Shaped (middle), and a U-Shaped configuration (right). In this paper, we label the regions on the native configuration (from left to right) as regions A, B, C, D, E, and F