From: FlexFlux: combining metabolic flux and regulatory network analyses
SBML support | Regulated FBA | ||||||||
---|---|---|---|---|---|---|---|---|---|
Software | Free | Metabolic | Regulatory | Graphical | Command line for | Dynamic | Steady state | ODEs | EFM |
dependencies | networks | networks | interface | batch processing | |||||
FlexFlux | Yes | Yes | Yes | Yes | Yes | Yes (Time | Yes | No | No |
dependent FBA) | (RSA + FBA) | ||||||||
Cell net analyser | No | Yes | Only for export | Yes | Yes | No | No | Yes | Yes |
COBRA | No | Yes | No | No | Yes | Yes | No | No | No |
(Dynami-cRFBA) | |||||||||
COBRApy | Yes | Yes | No | No | Yes | No | No | No | No |
OptFlux | Yes | Yes | No | Yes | No | No | No | No | Yes |
SurreyFBA | Yes | Yes | No | Yes | Yes | No | No | No | Yes |
FASIMU | Yes | Yes | No | No | Yes | No | No | No | No |
SBRT | Yes | Yes | No | Yes | Yes | No | No | No | Yes |