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Table 2 Comparison of biological associations constructed in YAGM, STRING and GeneMANIA.

From: YAGM: a web tool for mining associated genes in yeast based on diverse biological associations

Biological Association\Web tool

YAGM

STRING

GeneMANIA

Physical Interaction

v

v

v

Genetic Interaction

v

v

v

Co-expression

v

v

v

Co-citation

v

v

v

TF Binding

v

  

TF Regulation

v

  

Mutant Phenotype

v

  

Gene Fusion

 

v

 

Co-occurrence

 

v

 

Pathway

 

v

 

Co-inheritance

  

v

Co-localization

  

v

Shared Protein Domains

  

v

Gene Neighbourhoods

 

v

v