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Table 2 List of the 15 larger networks resulting from merging the PCUs

From: Network-dosage compensation topologies as recurrent network motifs in natural gene networks

Network

Genes and TFs

References

1

STE12, FUS3, GPA1, KSS1, DIG1, SST2, FAR1

[11, 15]

2

SKO1 , PTP3, HOG1, MSN2, WHI2, RCK2

[12, 16]

3

GAL4 , GAL3, GAL80, GAL1

[10]

4

SWI4, SWE1, CLB2, SWI6, CDC6

[13, 17]

5

GCN4 , GLN3, URE2

[14, 18, 19]

6

RAP1, TEL1, RIF2

 

7

INO4, INO2, TYE7

 

8

INO4, INO2, OPI1

 

9

SKN7, YAP1, TRR1, TRX2

 

10

PHO4, CLN3, PHO85, CRZ1

 

11

AFT1, SIT1

 

12

IME1, IME2

 

13

CBF4, MET4, MET30, MET32

 

14

MIG1, HXK2

 

15

RPN4, RPT2, RPT6, RPT3, RPT5, RPT1, SEM1, UBP6

 
  1. Networks 1–5 have at least one dosage compensation structure satisfying all topological constraints. For these networks, the transcription factor involved in the structure is bolded, the two network components in that structure are italicized and references documenting the interactions among those components and the TF are listed in the rightmost column. If a network contains more than one such structure, only one is shown.
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BMC Systems Biology

ISSN: 1752-0509

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