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Table 3 Connections of GI1 contigs by OMACC.

From: OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly

Neighboring contigs Gap size (bp) Best contig path Contig path length (bp) Length difference Consistent
010+,002+ 6451 010+:245+:253+:245+:253+:245+:253+:245+:002+** 6444 7 1
019-,034+ 24373 019-:200-:034+ 24362 11 1
017+,043- 9345 017+:176-:043- 9365 20 1
018-,033- 21609 018-:262+:181-:259-:033- 21547 62 1
034+,007+ 12182 034+:175-:007+ 12096 86 1
003+,038+ 16008 003+:227-:205+:038+ 16095 87 1
015+,021-* 11178 015+:021- 11025 153 1
036+,013- 17106 036+:149-:013- 17269 163 1
039-,057- 16268 039-:175-:057- 16105 163 1
084+,071+ 40296 084+:175+:142-:175+:142-:175+:142-:175+:142-:175+:142-:175+:142-:175+:071+** 40523 227 1
026+,044+ 17568 026+:199+:193-:199+:044+** 17305 263 1
029-,070- 8250 029-:179-:070- 7930 320 1
035+,006- 67333 035+:261-:173-:099-:182+:006- 67009 324 1
023+,010+ 19779 023+:159+:010+ 20127 348 1
027-,016- 75414 027-:196+:152+:196+:103-:126-:063-:016-** 74985 429 1
037+,025+ 18649 037+:176+:025+ 18218 431 1
043-,056+ 10828 043-:240+:056+ 10288 540 1
004-,035+ 24146 004-:175-:035+ 23260 886 1
044+,020- 44467 044+:168+:020- 43369 1098 1
022-,026+* 11242 022-:026+ 9992 1250 1
041+,104+ 27829 041+:175-:142+:175-:142+:175-:104+** 29356 1527 1
  1. The last column indicates whether the contig path length is consistent with the gap size, i.e., difference in length ≤2 Kb. *Gap closure unique to OMACC. **Best contig path different from those by FINISH.