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Table 4 Training times on block-wise cross validation experiments

From: Scalable prediction of compound-protein interactions using minwise hashing

Ratio

Number

MH-L1SVM

MH-L2SVM

L1SVM

L2SVM

1

600, 404

8 ± 0

7 ± 1

131 ± 7

117 ± 28

5

1, 801, 212

76 ± 9

31 ± 1

982 ± 184

252 ± 30

10

3, 302, 222

237 ± 23

55 ± 4

3925 ± 92

475 ± 93

25

7, 805, 252

582 ± 79

107 ± 4

2606 ± 265

322 ± 20

50

15, 310, 302

1889 ± 82

243 ± 8

7133 ± 664

729 ± 18

  1. The training time includes minwise hashing time. The number of negative examples is varied from the same number of positive examples to the number of negative examples 50 times larger than the number of all positive examples.