Table 5 Gene Ontology (GO) Biological Processes enriched in clusters of differential co-expression protein interaction modules

I

GO:0071842

cellular component organization at cellular level

I

GO:0007346

regulation of mitotic cell cycle

I

GO:2000241

regulation of reproductive process

I

GO:0009968

negative regulation of signal transduction

I

GO:0043066

negative regulation of apoptotic process

I

GO:0031577

spindle checkpoint

I

GO:0032088

negative regulation of NF-kappaB transcription factor activity

I

GO:0000086

G2/M transition of mitotic cell cycle

I

GO:0048522

positive regulation of cellular process

I

GO:0006366

transcription from RNA polymerase II promoter

I

GO:0042221

response to chemical stimulus

I

GO:0031623

receptor internalization

I

GO:0048468

cell development

I

GO:0050658

RNA transport

I

GO:0016032

viral reproduction

II

GO:0043065

positive regulation of apoptotic process

II

GO:0006366

transcription from RNA polymerase II promoter

III

GO:0016567

protein ubiquitination

III

GO:0000075

cell cycle checkpoint

III

GO:0042981

regulation of apoptotic process

III

GO:0000165

MAPK cascade

III

GO:0032268

regulation of cellular protein metabolic process

III

GO:0010627

regulation of intracellular protein kinase cascade

III

GO:0050863

regulation of T cell activation

III

GO:0007346

regulation of mitotic cell cycle

III

GO:0044419

interspecies interaction between organisms

III

GO:0006511

ubiquitin-dependent protein catabolic process

III

GO:0045892

negative regulation of transcription, DNA-dependent

III

GO:0007265

Ras protein signal transduction

III

GO:0007173

epidermal growth factor receptor signaling pathway

III

GO:0051090

regulation of sequence-specific DNA binding transcription factor activity

III

GO:0009967

positive regulation of signal transduction

III

GO:0016310

phosphorylation

III

GO:0045732

positive regulation of protein catabolic process

III

GO:0030518

intracellular steroid hormone receptor signaling pathway

III

GO:0042770

signal transduction in response to DNA damage

III

GO:0080134

regulation of response to stress

III

GO:0008285

negative regulation of cell proliferation

IV*

GO:0044419 *

interspecies interaction between organisms

IV*

GO:0000904 *

cell morphogenesis involved in differentiation

IV*

GO:0007165 *

signal transduction

V

GO:0065008

regulation of biological quality

V

GO:0001775

cell activation

V

GO:0018193

peptidyl-amino acid modification

V

GO:0048011

nerve growth factor receptor signaling pathway

V

GO:0043066

negative regulation of apoptotic process

V

GO:0000165

MAPK cascade

V

GO:0042060

wound healing

V

GO:0045860

positive regulation of protein kinase activity

V

GO:0071375

cellular response to peptide hormone stimulus