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Table 5 Results on average elapsed time

From: Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso

# groups

M I p

label

M I p +label

 

C = 0

1

2

C = 0

1

2

C = 0

1

2

2

55.5

43.5

41.5

46.2

46.9

46.2

80.8

64.6

62.6

4

57.9

51.9

42.8

50.6

47.7

48.0

127.7

63.8

62.5

8

56.9

55.8

55.6

54.3

50.5

50.8

194.9

68.2

67.1

10

54.2

57.4

52.5

57.1

52.2

51.8

235.1

73.0

72.8

15

55.6

57.2

55.2

65.2

55.5

55.1

342.5

79.8

79.2

20

57.8

60.4

55.2

68.1

58.2

58.3

320.8

84.6

82.9

  1. Results on average elapsed time (sec) for an iteration of the cross validation using the contact definition of 3 Ã…, M I p , labels representing kinds of amino acids and bases, and the grouping of amino acids with lasso parameter C = 0, 1, and 2.