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Table 4 Results on average AUC scores for test pairs using the contact definition of 5 Ã…

From: Prediction of protein-RNA residue-base contacts using two-dimensional conditional random field with the lasso

# groups

M I

M I p

label

M I+label

M I p +label

without lasso (C = 0)

2

0.550

0.520

0.568

0.547

0.565

4

0.543

0.506

0.584

0.563

0.581

8

0.541

0.576

0.584

0.578

0.570

10

0.527

0.588

0.545

0.528

0.560

15

0.527

0.587

0.539

0.526

0.518

20

0.530

0.570

0.539

0.506

0.508

lasso (C = 1)

2

0.527

0.570

0.564

0.575

0.562

4

0.552

0.555

0.582

0.571

0.575

8

0.510

0.559

0.581

0.584

0.590

10

0.511

0.567

0.587

0.579

0.590

15

0.523

0.571

0.571

0.578

0.574

20

0.514

0.572

0.581

0.587

0.592

lasso (C = 2)

2

0.543

0.585

0.581

0.567

0.566

4

0.513

0.557

0.582

0.584

0.580

8

0.509

0.568

0.576

0.574

0.579

10

0.500

0.563

0.594

0.588

0.590

15

0.505

0.591

0.583

0.576

0.582

20

0.502

0.566

0.594

0.598

0.602

  1. Results on average AUC scores for test pairs using the contact definition of 5 Ã…, M I, M I p , labels representing kinds of amino acids and bases, and the grouping of amino acids with lasso parameter C = 0, 1, and 2.