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Table 4 Overview of metabolic pathway databases used

From: Consensus and conflict cards for metabolic pathway databases

Database

Export formats used

Version

Downloaded from

EHMN

Excel

2

http://www.ehmn.bioinformatics.ed.ac.uk/

H. sapiens Recon 1

Flat file, SBML

1

http://bigg.ucsd.edu/

HumanCyc

Flat file

15.0

http://biocyc.org/download.shtml

KEGG

Flat file, KGML

58

http://www.kegg.jp/kegg/download/

Reactome

MySQL database

36

http://reactome.org/download/index.html

  1. All data from the pathway databases was downloaded in the first week of May 2011.