Skip to main content

Table 3 Excerpt of the C 2 Card centered at the reaction ‘deoxyuridine + phosphate < == > 2-deoxy-d-ribose 1-phosphate + uracil’

From: Consensus and conflict cards for metabolic pathway databases

Database

EC number

Gene(s)

Pathway

EHMN

2.4.2.1, 2.4.2.4

PNP*, TYMP*, UPP1

Pyrimidine metabolism

H. sapiens Recon 1

—

PNP* or UPP2

Nucleotides

HumanCyc

2.4.2.23

—

—

—

—

salvage pathways of pyrimidine deoxyribonucleotides

KEGG

2.4.2.1

PNP*

Pyrimidine metabolism

2.4.2.4

TYMP*

Reactome

2.4.2.3

UPP1 or UPP2

Pyrimidine catabolism and Pyrimidine salvage reactions

 

2.4.2.-

TYMP*

 
  1. Genes are represented by the HGNC symbol to which their Entrez Gene IDs are linked. The genes on which the majority of the five pathway databases agree, i.e., PNP and TYMP, are indicated with a ‘*’.