Figure 1

Visualization of the six BioPAX example files, provided in BioPAX 3.0 documentation. The BioPAX 3.0 documentation available at http://biopax.org contains six simple examples of BioPAX 3.0 files that describe different aspects of biological network interactions (genetic interaction, short metabolic pathway, gene regulatory network, biochemical reaction, phosphorylation, protein interaction). Here we show how BiNoM visualizes these examples after their import. The BiNoM type of representation is indicated below the reaction type, in brackets (Reaction Network, Pathway Structure and Interaction Map). The graphical node and edge semantic is described in more details in the BiNoM manual.