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Table 5 Knockdown data edge direction benchmark

From: Identification of direction in gene networks from expression and methylation

 

Predicted T → R

Predicted R → T

No Knockdown R → T

N 11

N 12

Knockdown R → T

N 21

N 22

  1. Contingency table used for the edge direction (ED) benchmark. This table is conditioned on IDEM predicting that an edge exists either R → T or T → R. The row determines whether an edge R → T exists according to the knockdown data. The column determines which direction IDEM predicts for the edge.