Table 4 KGML subtypes and the corresponding SBML Qual sign attributes and SBO identifiers
From: Path2Models: large-scale generation of computational models from biochemical pathway maps
KGML subtype | SBML Qual sign | SBO identifier | SBO name |
|---|---|---|---|
activation | positive | SBO:0000170 | stimulation |
inhibition | negative | SBO:0000169 | Inhibition |
expression | positive | SBO:0000170 | stimulation |
repression | negative | SBO:0000169 | inhibition |
indirect effect | unknown | SBO:0000344 | molecular interaction |
state change | unknown | SBO:0000168 | control |
binding/association | unknown | SBO:0000177 | non-covalent binding |
dissociation | unknown | SBO:0000177 | non-covalent binding |
missing interaction | unknown | SBO:0000396 | uncertain process |
phosphorylation | unknown | SBO:0000216 | phosphorylation |
dephosphorylation | unknown | SBO:0000330 | dephosphorylation |
glycosylation | unknown | SBO:0000217 | glycosylation |
ubiquitination | unknown | SBO:0000224 | ubiquination |
methylation | unknown | SBO:0000214 | methylation |