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Table 1 Comparison of the network properties for the time- and condition-dependent minimal networks for AdaM and MADE

From: Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli

  Metabolites Reactions EFMs
AdaM 416-427 480-486 1060 - 9582
MADE 545 658-806
original network 761 1075
  1. Given are the number of metabolites and reactions for the networks extracted by our approach and by MADE compared to the original network.
  2. Note that, with the currently available tools, only our approach extracts minimal networks for which the full set of EFMs can be computed.