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Table 1 Detailed information about the DETFs

From: The extended TILAR approach: a novel tool for dynamic modeling of the transcription factor network regulating the adaption to in vitro cultivation of murine hepatocytes

DETF

Cluster

Associated biological processes

Atf3

5

gluconeogenesis; regulation of cell proliferation

Cebpa

4

liver development; fat cell differentiation; regulation of cell proliferation; urea cycle

Cebpb

6

cell differentiation; anti-apoptotic

Cebpd

4

fat cell differentiation

Csrnp1

5

apoptotic process; platelet-derived growth factor receptor signaling pathway

Dbp

6

rhythmic processes

E2f6

2

regulation of transcription involved in G1/S phase of mitotic cell cycles;

Egr1

6

BMP signaling; Il1 mediated signaling pathway; regulation of Wnt signaling pathway; regulation of cell-death; response to glucose stimulus; response to insulin stimulus

Fos

6

cellular response to extracellular stimuli; response to stress

Foxa1

2

glucose homeostasis; chromatin remodeling

Gatad1

2

-

Id3

3

regulation of cell cycle; regulation of apoptosis

Irf1

3

cellular response to Il1; regulation of cell-death

Klf16

6

-

Maff

5

epidermal cell-differentiation

Nr1h4

2

bile acid metabolic process; regulation of carbohydrate- and urea metabolic process;

Ppara

4

Glucose metabolic process; lipid metabolic process; response to insulin stimulus

Srebf1

4

Steroid metabolic process; response to glucose stimulus; lipid metabolic process;

Srf

4

actin filament organization; cell-cell adhesion; developmental growth;

Tgif1

3

regulation of cell proliferation; regulation of retinoic acid receptor signaling pathway

Tsc22d1

2

regulation of apoptotic process; regulation of cell proliferation

Zbtb16

4

positive regulation of apoptosis; negative regulation of proliferation

  1. DETF cluster membership and associated biological functions based on the information of GeneOntology. For all but Gatad1 and Klf16 it was found that the TFs can either be associated with metabolic processes and/or cell faith.