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Table 3 A list of 21 Rat genes whose proteins are found to be differentially expressed with statistical significance between FL_vs_CTRL and L_vs_CTRL conditions

From: An integrated proteomics analysis of bone tissues in response to mechanical stimulation

Rat Gene

Human Gene

FC (CTRL_L)

FC (CTRL_FL)

FC (FL_L)

Max Confidence

Peptide Evidence

Capon

NOS1AP

6.72884

6.00145

1.1212

0.98

≥6

Ddx18

DDX18

1.14716

2.13095

-1.85759

0.98

≥6

Ddx21a

DDX21

3.28614

4.10949

-1.25055

0.96

≥6

Fbf1_predicted

FBF1

-3.10292

-2.81444

-1.1025

0.98

≥6

Fcho2_predicted

FCHO2

-1.97277

-2.79227

1.41541

0.98

≥6

Klk14_predicted

KLK14

1.2212

1.88874

-1.54662

0.98

≥6

LOC301506

FSD1

-2.77612

-3.54757

1.27789

0.99

≥6

LOC306805

ASPN

1.83348

2.8254

-1.54101

0.99

≥12

Mrpl45_predicted

MRPL45

2.47117

3.98149

-1.61118

0.99

≥6

Mrpl53_predicted

MRPL53

3.70412

1.94325

1.90615

0.96

≥6

Pdcd8

PDCD8

2.91378

4.15437

-1.42577

0.96

≥6

Pik4cb

PIK4CB

-2.77612

-3.54757

1.27789

0.99

≥6

RGD1562139_predicted

RPL29

2.47771

3.28214

-1.32467

0.98

≥6

Rab40b_predicted

RAB40B

5.42109

4.99103

1.08617

0.98

≥6

Raf1

RAF1

-2.1328

-1.59117

-1.3404

0.97

≥6

Sema5b_predicted

SEMA5B

1.75998

2.60246

-1.47869

0.99

≥6

Serpinb13_predicted

SERPINB13

3.01946

3.82539

-1.26691

0.97

≥6

Slc1a3

SLC1A3

-1.97126

-2.78988

1.41528

0.98

≥6

Slc4a3

SLC4A3

2.15184

1.80834

1.18995

0.96

≥6

Tex101

TEX101

2.007

1.60395

1.25128

0.97

≥6

Upf2_predicted

UPF2

-1.72341

-2.54157

1.47474

0.98

≥6

  1. * "Max Confidence" was calculated as 1- smallest q-value among all the comparison conditions (FL_L, CTRL_FL, and CTRL_L). "Peptide evidence" refers to total number of peptides per group used to calculate Fold Change (FC) and q-value in groupwise comparisons for protein quantifications.