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Table 2 Four patterns of predicted MafB motifs

From: Combinatorial motif analysis of regulatory gene expression in Mafb deficient macrophages

MafB binding sequence

MafB motif

tgtctatgctcag

Width

Motif

Ambiguous motif

cttttgtgctgtt

N=8

CTGCTGAC

[CTG]TGCT[GC]AC

ccaaactgctgac

N=9

TCTGCTGAC

[TAG][CTG]TGCT[GC]AC

cgtaactgctgac

N=10

ATCTGCTGAC

[AT][TAG][CTG]TGCT[GC]AC

caaatttgcagac

N=11

TATCTGCTGAC

[TA][AT][TAG][CTG]TGCT[GC]AC

taaagttgctgaa

(N=Nucleotide)

catttctgctgac

 

aggatgtgatgac

 

tgttgttgctcac

 

(Underline; MARE)

 
  1. MafB motifs were extracted from 9 short MafB binding sequences containing 5’ AT-rich half-MARE(MARE) and validated by biochemical experimentations.
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BMC Systems Biology

ISSN: 1752-0509

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