From: SNP-PRAGE: SNP-based parametric robust analysis of gene set enrichment
Process | Z-statistic method | SNP-PRAGE | GLOSSI (100 permutations) | GSEA (1000 permutations) |
---|---|---|---|---|
Single SNP analysis | 40sec | 40sec | 34 min | 26 min 15sec |
Gene set analysis | 0.3 sec | 52sec | 0.5sec | 2 min 10sec |
Total analysis | 40.3sec | 1min 32sec | 34 min 0.5sec | 28 min 25sec |