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Table 8 Computing time for simulation data analysis

From: SNP-PRAGE: SNP-based parametric robust analysis of gene set enrichment

Process

Z-statistic method

SNP-PRAGE

GLOSSI (100 permutations)

GSEA (1000 permutations)

Single SNP analysis

40sec

40sec

34 min

26 min 15sec

Gene set analysis

0.3 sec

52sec

0.5sec

2 min 10sec

Total analysis

40.3sec

1min 32sec

34 min 0.5sec

28 min 25sec