Table 5 Simulated gene set based on MsigDB pathways
From: SNP-PRAGE: SNP-based parametric robust analysis of gene set enrichment
Simulated gene set | No. genes | Gene size | Reference gene set |
|---|---|---|---|
Set1 | 20 | 9~12 SNPs | HSA04060_CYTOKINE_CYTOKINE_RECEPTOR_INTERACTION |
Set2 | 20 | 12~20 SNPs | HSA04010_MAPK_SIGNALING_PATHWAY |
Set3 | 20 | 20~30 SNPs | HSA04810_REGULATION_OF_ACTIN_CYTOSKELETON |
Set4 | 20 | 26~40 SNPs | HSA04510_FOCAL_ADHESION |
Set5 | 20 | 36~49 SNPs | HSA04080_NEUROACTIVE_LIGAND_RECEPTOR_INTERACTION |