Conditional random field approach to prediction of protein-protein interactions using domain information

BMC Systems Biology

Table 2 The AUC results for training and test datasets of D. melanogaster by the CRF method with MI, that without MI, the EM method, and the association method

iteration	CRF with MI		CRF without MI		EM		Assoc
	training	test	training	test	training	test	training	test
1st	0.999255	0.707692	0.999977	0.738462	0.999961	0.769231	0.999938	0.769231
2nd	0.997928	0.818182	0.997905	0.848485	0.999938	0.727273	0.999736	0.727273
3rd	0.997920	0.708333	0.997920	0.562500	0.999922	0.645833	0.999884	0.625000
4th	0.998660	0.863636	0.999318	0.886364	0.999814	0.840909	0.999853	0.840909
5th	0.999234	0.819444	0.999954	0.833333	0.999861	0.527778	0.999923	0.527778
average	0.998599	0.783458	0.999015	0.773829	0.999899	0.702205	0.999867	0.698038

ISSN: 1752-0509