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Table 3 The predictive accuracy and MCC on the second level of EC hierarchy for AM-SVM and SVMHL.

From: Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context

Family name

AM-SVM

SVMHL

 

Accuracy(%)

MCC

Accuracy(%)

MCC

EC 1 : Oxidoreductases

95.3 ± 3.8

0.95 ± 2.9%

98.1±4.9

0.98±2.6%

EC 2 : Transferases

94.1 ± 2.9

0.90 ± 8.4%

97.6±2.6

0.93±8.2%

EC 3 : Hydrolases

92.9 ± 3.9

0.91 ± 6.6%

95.4±3.7

0.94±6.3%

EC 4 : Lyases

93.6 ± 9.1

0.93 ± 5.4%

95.8±8.3

0.96±4.7%

EC 5 : Isomerase

94.7 ± 6.4

0.89 ± 4.9%

96.8±6.2

0.92±4.1%

EC 6 : Ligases

89.2 ± 6.9

0.93 ± 5.1%

90.1±6.1

0.96±6.2%