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Table 4 Fluorescence labeled primers for gel shift assays

From: More than just a metabolic regulator - elucidation and validation of new targets of PdhR in Escherichia coli

Binding site

Sequence 5'-3'

Label

PdhRop

GCCGAAGTCAATTGGTCTTACCAATTTCATGTCTGTG

5'DY682

 

CACAGACATGAAATTGGAAGACCAATTGACTTCGGC

5'DY782

GlcDop

CTATCTCTTTAGCTACCGGTCAGACCATTTTTTTTCCAGCTCT

5'DY682

 

AGAGCTGGAAAAAAAATGGTCTGACCGGTAGCTAAAGAGATAG

5'DY782

MraZop

TCGGTATGCCTTGTGACTGGCTTGACAAGCTTTTCCTCAGCTCC

5'DY682

 

GGAGCTGAGGAAAAGCTTGTCAAGCCAGTCACAAGGCATACCGA

5'DY782

MetBop

AACGGCTATTTGGGATTTGCTCAATCTATACGCAAAGAAGTTT

5'DY682

 

AAACTTCTTTGCGTATAGATTGAGCAAATCCCAAATAGCCGTT

5'DY782