Skip to main content

Table 1 Biological parameter estimates.

From: Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study

Parameter

Description

Value

l

cytoplasm length

100 μ m

w

cytoplasm width

10 μ m

L

tissue length

2 × 10-3 m

L s

agar-block length

2 × 10-3 m

λ

apoplast thickness

0.5 μ m

P diff

membrane permeability

5.6 × 10-7 m s-1

P PIN

PIN permeability

3.3 × 10-6 m s-1

D

diffusion coefficient

6.7 × 10-10 m2 s-1

pH c

cytoplasm pH

7.2

pH a

apoplast pH

5.3

pK

dissociation constant

4.8

V

cell membrane voltage

-0.120 V

T

temperature

295.15 K

F D

Faraday constant

96485.3399 Cmol-1

R

gas constant

8.314472 K-1 mol-1

  1. Parameters used for both the stochastic and deterministic models.