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Table 3 iSyn669 Biomass composition.

From: Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

Metabolite

mmole/g DCW

Metabolite

mmole/g DCW

Amino acids[38]

 

Deoxyribonucleotides[58]

 

Alanine

0.499149

dATP

0.0241506

Arginine

0.28742

dTTP

0.0241506

Aspartate

0.234232

dGTP

0.02172983

Asparagine

0.234232

dCTP

0.02172983

Cysteine

0.088988

Ribonucleotides[1]

 

Glutamine

0.255712

AMP

0.14038929

Glutamate

0.255712

UMP

0.14038929

Glycine

0.595297

GMP

0.12374585

Histidine

0.092056

CMP

0.12374585

Isoleucine

0.282306

Lipids[59]

 

Leucine

0.437778

16C-lipid

0.20683718

Lysine

0.333448

(9Z)16C-lipid

0.01573412

Methionine

0.149336

18C-lipid

0.00351776

Phenylalanine

0.180021

(9Z)18C-lipid

0.03188596

Proline

0.214798

(9Z,12Z)18C-lipid

0.03568367

Serine

0.209684

(9Z,12Z,15Z)18C-lipid

0.01797109

Threonine

0.246506

(6Z,9Z,12Z)18C-lipid

0.05031906

Tryptophan

0.055234

(6Z,9Z,12Z,15Z)18C-lipid

0.01448179

Tyrosine

0.133993

Antenna chromophores[60]

 

Valine

0.411184

Chlorophyll a

0.02728183

Carbohydrates[61]

Carotenoids

0.00820225

Glycogen

0.01450617

  
  1. Biomass composition description with references where the information was retrieved from. All this building blocks with their respective stoichiometric coefficient is converted into one gram of dry cell weight. Biomass equation is reaction Biomass in Additional files 2 and 4.