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Table 1 Comparison of DBSolve Optimum functionality with that of DBSolve5, Copasi, Teranode, Cell Designer and SBML Pet

From: DBSolve Optimum: a software package for kinetic modeling which allows dynamic visualization of simulation results

 

DBSolve Optimum

DBSolve5

Copasi

TERANODE suite

Cell Designer

SBML PET

Create model

+

+

+

+

+

-

SBML support

+

-

+

+

+

+

ODE Solver

+

+

+

+

+

+

Stochastic ODE Solver

-

-

+

-

-

-

Steady state analysis

+

+

+

-

-

-

Explicit Solver

+

+

-

-

-

-

Implicit Solver

+

+

+

-

-

-

Fitting ODE

+

+

+

+

+

+

Fitting Explicit

+

+

-

-

-

-

Fitting Implicit

+

+

+

-

-

-

Bifurcation analysis

+

+

-

-

-

-

Plotting of calculation results 2D/3D

+/+

+/-

+/-

+/-

+/-

- /-

Animation of calculation results

+

-

+

-

-

-

Commercial

-

-

-

+

-

-

Multiplatform

-

-

+

+

+

+

  1. A list of tools implemented (marked by "+") or not implemented (marked by "-") in corresponding software package is presented.