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Table 2 Details about the 31 clusters of co-expressed genes.

From: Dissecting the fission yeast regulatory network reveals phase-specific control elements of its cell cycle

Cluster #

Size

Mean phase (degrees)

p-value for phase uniformity

Significant motif

Dominant Gene Ontology category

9

76

6

4.54E-01

 

transmembrane transporter activity

5

52

17

7.81E-08

 

cellular metabolic process, cellular component organization and biogenesis

14

42

42

6.41E-04

Mcb1

nucleotide binding, substrate-specific transporter activity

21

80

49

2.07E-17

G.TTGT [TG] [AG]

oxidoreductase activity

29

9

53

6.84E-12

Histone CACCACC

histones

15

41

55

1.49E-18

GTTGGC [AT]GT

ion binding

10

12

95

3.54E-02

 

cellular metabolic process, protein binding, stress response

12

96

102

3.52E-04

 

transmembrane transporter activity

20

78

103

1.27E-07

CAAGTT

transport, establishment of localization

18

34

108

1.89E-16

 

cellular metabolic process, nitrogen compound metabolic process

17

61

112

4.52E-12

 

cellular metabolic process, cofactor binding

16

49

135

1.57E-25

GTT.GCT

nitrogen compound metabolic process

27

45

139

1.76E-02

 

transmembrane transporter activity

28

8

150

8.00E-07

  

19

24

174

9.65E-15

GTGACTG [CT]T TAGGGTAGGG

cellular metabolic process, structural constituent of ribosome

22

47

175

5.38E-02

CGTTAGTTTT

regulation of metabolic process

23

118

175

1.03E-06

  

26

83

188

1.90E-39

AGTTTG

cellular component organization and biogenesis

11

43

194

9.52E-04

GTCGGTTTCC

transmembrane transporter activity

24

103

195

3.52E-18

 

cellular metabolic process, ion binding

25

59

211

4.09E-02

[GT]TAAACA

ribosome biogenesis and assembly

3

70

255

1.06E-07

TGTTTAC

cell cycle, chromosome segregation

13

60

258

9.74E-05

 

cell cycle

1

155

259

2.21E-11

FKH

cell cycle, stress response, cellular metabolic process, protein binding, response to endogenous stimulus

2

131

276

3.34E-13

FKH TCTTCT

cell cycle

4

101

286

1.07E-06

FKH TGTAAGC

cell cycle, cellular component organization and biogenesis

8

41

328

1.74E-02

ACCATTG FKH

primary metabolic process, ion binding, regulation of biological quality

6

140

343

1.39E-03

T [GC]GTG [TG]T

cellular component organization and biogenesis

31

49

344

1.47E-33

FKH

cell division, cytokinetic process

30

22

357

6.56E-05

Dbl10 Ace2

cell cycle, regulation of metabolic process

7

71

359

6.15E-13

Ace2

cell cycle, cell communication

  1. Motifs similar to known motifs are given by the name published in the literature (ACCACA ~ Mcb1, CCCTTACCC ~ Histone, TTGTTTAC ~ FKH, CGTGTCGCGT ~ Dbl10, ACCAGCC ~ Ace2). Newly discovered motifs are given by their consensus sequence.