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Table 2 Set of reactions and parameters for the repressed bacterium operon model, from [64].

From: Hybrid stochastic simplifications for multiscale gene networks

Reaction

Parameters

Repressor Binding

 

1)

k 1 = 108M-1s-1, km 1 = 1s-1

2)

k 2 = 108M-1s-1, km 2 = 10s-1

3)

k 3 = 0.1s-1

4)

k 4 = 0.3s-1

Translation

 

5)

k 5 = 0.3s-1

6)

k 6 = 108M-1s-1, km 6 = 2.25s-1

7)

k 7 = 0.5s-1

8)

k 8 = 0.015s-1

Protein folding and decay

 

9)

k 9 = (ln 2/5400) s-1

10)

k 10 = 10-5s-1

11)

k 11 = 10-5s-1