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Table 1 Constants and values used in stochastic simulations

From: Cascading signaling pathways improve the fidelity of a stochastically and deterministically simulated molecular RS latch

Constant

Meaning

Value

Units

k on

Association rate

104

M-1s-1

k off

Dissociation rate

100

s-1

k cat

Catalysis rate

104

s-1

V

Volume of reaction space

m3

menzyme

Mass of enzyme

104

gmol-1

msubstrate

Mass of substrate

103

gmol-1

D

Diffusion coefficient

10-10

m2s-1

  1. Rate constants were based on kinases and phosphatases from the MAPK pathway, retrieved from the Database of Quantitative Cellular Signalling [33].