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Table 1 Parent GO terms selected for the analysis, and number of elements included.

From: Interactome and Gene Ontology provide congruent yet subtly different views of a eukaryotic cell

GO term

Level1

Genes2

ORFs3

Prot.

DIP4

Prot.DIP/

ORFs (%)

Prot.

GOLD5

Prot.GOLD/

ORFs (%)

Developmental process (BP)

1

768

757

632

83.5%

257

34.0%

Reproduction (BP)

1

299

298

245

82.2%

111

37.3%

Establishment of cellular localization (BP)

1

573

568

452

79.6%

188

33.1%

Response to stimulus (BP)

1

670

657

514

78.2%

207

31.5%

Ribonucleoprotein complex (CC)

2

556

459

318

69.3%

96

20.9%

Organelle envelope (CC)

2

346

345

230

66.7%

69

20.0%

Transcription regulator activity (MF)

1

307

303

276

91.1%

107

35.3%

Structural molecule activity (MF)

1

307

286

231

80.8%

75

26.2%

Transporter activity (MF)

1

380

377

297

78.8%

63

16.7%

     

Average:

78.9%

 

Average:

28.3%

  1. BP: Biological Process; CC: Cellular Component; MF: Molecular Function. 1: Levels of the parent GO terms. Level 1 terms are hierarchically located just below the three main categories (BP, CC and MF) while Level 2 terms are below a Level 1 term. 2: Number of genes selected for the analysis, i. e. those ascribed to the parent GO term which are also included in one of the selected child GO terms. 3: Genes among those in the previous column that contain ORFs and therefore encode for proteins. 4: Number of products among those in the selected ORFs for which interactions were compiled in the DIP database. 5: Same as 4, but for the GOLD dataset.