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Table 8 Summary of the VPC fate patterns of 48 combinations concerning the AC and four mutants.

From: Simulation-based model checking approach to cell fate specification during Caenorhabditis elegans vulval development by hybrid functional Petri net with extension

RowID

AC

Genotype

Fate Patterns (JA)

Fate Patterns (ST)

Fate Patterns (STA)

Ref.

   

lin-12 lin-15 vul lst P3.pP4.pP5.pP6.pP7.pP8.p

P3.pP4.pP5.pP6.pP7.pP8.p

P3.pP4.pP5.pP6.pP7.pP8.p

 

1†

+

wt wt wt wt

[332123]

-

-

[49]

2†

+

wt wt wt ko

[331113]

-

-

[35, 50]

[3]

+

wt wt ko wt

[333333]

[333333]

[331113] [331123] [331133]

[332313] [332323] [332333]

[333323] [333333]

[32]

4†

+

wt wt ko ko

[333333]

-

-

u.d.

[5]

+

wt ko wt wt

 

Unstable pattern (refer to Table 9)

 

[32]

6†

+

wt ko wt ko

[111111]

-

-

[46]

[7]

+

wt ko ko wt

[333333]

[333333]

[333333]

[32, 37, 51]

8

+

wt ko ko ko

[333333]

-

-

n.d.

[9]

+

ko wt wt wt

[331113]

[331113]

[311111] [311112] [311113]

[321111] [321112] [321113]

[331111] [331112] [331113]

-

[32]

10†

+

ko wt wt ko

[331113]

-

-

u.d.

[11]

+

ko wt ko wt

[333333]

[333333]

[311113] [311123] [311133]

[331133] [331213] [331223]

[332133] [332213] [332223]

[333133] [333213] [333223]

-

[32]

12

+

ko wt ko ko

[333333]

-

-

n.d.

[13]

+

ko ko wt wt

[111111]

[111111]

[111111]

[32]

14

+

ko ko wt ko

[111111]

-

-

n.d.

15

+

ko ko ko wt

[333333]

-

-

n.d.

16

+

ko ko ko ko

[333333]

-

-

n.d.

[17]

+

gf wt wt wt

[222122]

[222122]

[122122] [222122] [322122]

[32]

18

+

gf wt wt ko

[221112]

-

-

n.d.

[19]

+

gf wt ko wt

[222222]

[222222]

[122222] [222222] [322222]

[32]

20

+

gf wt ko ko

[222222]

-

-

n.d.

[21]

+

gf ko wt wt

 

Unstable pattern (refer to Table 9)

 

[32]

22

+

gf ko wt ko

[111111]

-

-

n.d.

23

+

gf ko ko wt

[222222]

-

-

n.d.

24

+

gf ko ko ko

[222222]

-

-

n.d.

25†

-

wt wt wt wt

[333333]

-

-

[52]

26†

-

wt wt wt ko

[333333]

-

-

[50]

27

-

wt wt ko wt

[333333]

-

-

n.d.

28

-

wt wt ko ko

[333333]

-

-

n.d.

[29]

-

wt ko wt wt

 

Unstable pattern (refer to Table 9)

 

[32]

30

-

wt ko wt ko

[111111]

-

-

n.d.

31

-

wt ko ko wt

[333333]

-

-

n.d.

32

-

wt ko ko ko

[333333]

-

-

n.d.

[33]

-

ko wt wt wt

[333333]

[333333]

[333333]

[32]

34

-

ko wt wt ko

[333333]

-

-

n.d.

35

-

ko wt ko wt

[333333]

-

-

n.d.

36

-

ko wt ko ko

[333333]

-

-

n.d.

[37]

-

ko ko wt wt

[111111]

[111111]

[111111] [111121] [111131]

[32]

38

-

ko ko wt ko

[111111]

-

-

n.d.

39

-

ko ko ko wt

[333333]

-

-

n.d.

40

-

ko ko ko ko

[333333]

-

-

n.d.

[41]

-

gf wt wt wt

[222222]

[222222]

[122222] [222222] [322222]

[32]

42†

-

gf wt wt ko

[222222]

-

-

[50]

[43]

-

gf wt ko wt

[222222]

[222222]

[222222]

[32, 53]

44

-

gf wt ko ko

[222222]

-

-

n.d.

[45]

-

gf ko wt wt

 

Unstable pattern (refer to Table 9)

 

[32]

46

-

gf ko wt ko

[111111]

-

-

n.d.

47

-

gf ko ko wt

[222222]

-

-

n.d.

48

-

gf ko ko ko

[222222]

-

-

n.d.

  1. Table 8: n.d.: not determined, i.e., the fate pattern is only predicted by the in silico model without in vivo evidences to support. In lstko mutant, all lst genes are null: ark-1, lip-1, dpy-23, lst-1, lst-2, lst-3, and lst-4. In vulko mutant, the genes of let-23, sem-5, let-60, mpk-1 are null. u.d.: unpublished data; AC(+/-): anchor cell formed/ablated; 1: 1°; 2: 2°; 3: 3°.