Table 2 Types of molecules defined in TP.
From: Systematic reconstruction of TRANSPATH data into Cell System Markup Language
(a) Proteins | |||
|---|---|---|---|
species-specific | species-nonspecific | ||
nonmodified | modified | nonmodified | modified |
Complex | complex_mod | orthocomplex | orthocomplex_mod |
Family | family_mod | orthofamily | orthofamily_mod |
Isogroup | isogroup_mod | orthogroup | orthogroup_mod |
Basic | basic_mod | orthobasic | orthobasic_mod |
(b) Nonproteins | |||
group (XOR), mRNA basic, miRNA basic, pre-miRNA basic, small molecule, and other | |||